Filip Malmberg | Publications | Teaching | Software

List of publications for Filip Malmberg

PhD thesis

F. Malmberg
Graph-based Methods for Interactive Image Segmentation
Acta Universitatis Upsaliensis, Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214; 813, ISBN 978-91-554-8037-0.

Book chapters

I. Nyström, P. Olsson, J. Nysjö, F. Nysjö, F. Malmberg, S. Seipel, J.-M. Hirsch, I. B. Carlbom
Virtual Cranio-Maxillofacial Surgery Planning with Stereo Graphics and Haptics
Chapter 4, pages 29-42, Computer-Assisted Musculoskeletal Surgery -Thinking and Executing in 3D. L. Ritacco, F. Milano and E. Chao, editors. Springer-Verlag, 2015.

Peer reviewed journal publications

R. Strand , F. Malmberg, L. Johansson, L. Lind, M. Sundbom, H. Ahlström, J. Kullberg
A concept for holistic whole body MRI data analysis, Imiomics
PLoS ONE 12(2), 2017.

A. Christersson, J. Nysjö, L. Berglund, F. Malmberg, I.-M. Sintorn, I. Nyström, S. Larsson
Comparison of 2D radiography and a semi-automatic CT-based 3D method for measuring change in dorsal angulation over time in distal radius fractures
Skeletal Radiology, Volume 45, Issue 6, pp 763-769, 2016.

Filip Malmberg, Cris L. Luengo Hendriks, Robin Strand
Exact Evaluation of Targeted Stochastic Watershed Cuts
Discrete Applied Mathematics, Volume 216, Part 2, 2017.

Johan Nysjö, Filip Malmberg, Ida-Maria Sintorn, Ingela Nyström
BoneSplit — A 3D Texture Painting Tool for Interactive Bone Separation in CT Images
Journal of WSCG, Vol.23, No.2, pp. 157-166, 2015.

R. Nordenskjöld, F. Malmberg, E.-M. Larsson, A. Simmons, H. Ahlström, L. Johansson, J. Kullberg
Intracranial volume normalization methods: considerations when investigating gender differences in regional brain volume
Psychiatry research: Neuroimaging (Vol. 231, Issue 3, pp. 227-235), 2014

F. Malmberg, R. Nordenskjöld, R. Strand and J. Kullberg
SmartPaint — A Tool for Interactive Segmentation of Medical Volume Images
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2014

F. Malmberg and C. L. Luengo Hendriks
An Efficient Algorithm for Exact Evaluation of Stochastic Watersheds
Pattern Recognition Letters (Vol. 47, pp. 80-84), 2014. (Code).

K. C. Ciesielski, R. Strand, F. Malmberg and P. K. Saha
Efficient algorithm for finding the exact minimum barrier distance
Computer Vision and Image Understanding (Vol. 123, pp. 53-64), 2014.

G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, L. Reisaeter, V. Graham, G. Guillard, N. Birbeck, J. Zhang, R. Strand, F. Malmberg, Y. Ou, C. Davatzikos, M. Kirschner, F. Jung, J. Yuan, W. Qui, Q. Gao, P. Edwards, B. Maan, F. van der Heijden, S. Ghose, J. Mitra, J. Dowling, D. Barratt, H. Huisman, and A. Madabhushi
Evaluation of prostate segmentation algorithms for MRI: the PROMISE12 challenge
Medical Image Analysis (Volume 18, Issue 2, pp. 359-373), 2013.

R. Nordenskjöld, F. Malmberg, E.-M. Larsson, A. Simmons, S. J. Brooks, L. Lind, H. Ahlström, L. Johansson, J. Kullberg.
Intracranial volume estimated with commonly used methods could introduce bias in studies including brain volume measurements
Neuroimage (Vol. 83, pp. 355-360), 2013.

R.H. Khonsari, M. Friess, J. Nysjö, G. Odri, F. Malmberg, I. Nyström, E. Messo, J.M. Hirsch, E.A.M. Cabanis, K.H. Kunzelmann, J.M. Salagnac, P. Corre, A. Ohazama, P.T. Sharpe, P. Charlier and R. Olszewski.
Shape and Volume of Craniofacial Cavities in Intentional Skull Deformations
American Journal of Physical Anthropology (Vol. 151, Issue 1, pp. 110-119), 2013.

A. Gifford, J. Kullberg, J. Berglund, F. Malmberg, K. C. Coate, P. E. Williams, A. D. Cherrington, M. J. Avison and E. B. Welch.
Canine Body Composition Quantification using 3 Tesla Fat-Water MRI
Journal of Magnetic Resonance Imaging (published online 17 April 2013).

M. Rönn, P. M. Lind, H. Karlsson, K. Cvek, J. Berglund, F. Malmberg, J. Örberg, L. Lind, F. Ortiz-Nieto, J. Kullberg
Quantification of total and visceral adipose tissue in fructose-fed rats using water-fat separated single Echo MRI.
Obesity (Vol. 21, Issue 9, pp. E388-E395), 2013.

R. Strand, K. C. Ciesielski, F. Malmberg, P. K. Saha.
The Minimum Barrier Distance
Computer Vision and Image Understanding (Vol. 117, Issue 4, pp. 429-437), 2013.

M. Rönn, J. Kullberg, H. Karlsson, J. Berglund, F. Malmberg , J. Örberg, L. Lind, H. Ahlström.
Bisphenol A exposure increases liver fat in juvenile fructose-fed Fischer 344 rats
Toxicology (Vol. 303, pp 125-132, 2013)

F. Malmberg, J. Lindblad, C. Östlund, K.M. Almgren, E.K. Gamstedt.
Measurement of fibre-fibre contact in three-dimensional images of fibrous materials obtained from X-ray synchrotron microtomography.
Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment (Vol 637, No 1, pp. 143-148, 2011)

F. Malmberg, J. Lindblad, N. Sladoje and I. Nyström.
A Graph-based Framework for Sub-pixel Image Segmentation.
Theoretical Computer Science (Vol. 412, Issue 15, pp 1338-1349, 2011)
Top 25 Hottest Articles in Theoretical Computer Science, 2011

K.M. Almgren, E.K. Gamstedt, P. Nygård, F. Malmberg, J. Lindblad, and M. Lindström.
Role of fibre-fibre and fibre-matrix adhesion in stress transfer in composites made from resin-impregnated paper sheets.
International Journal of Adhesion and Adhesives (Vol. 29, no. 5, pp. 551-557, 2009)

Peer reviewed conference publications

F. Malmberg, R. Strand, J. Zhang, S. Sclaroff
The Boolean Map Distance: Theory and Efficient Computation
In proceedings of the 20th international conference on Discrete Geometry for Computer Imagery (DGCI), 2017.

R. Strand, K.C. Ciesielski, F. Malmberg, P. K. Saha
The Minimum Barrier Distance: A Summary of Recent Advances
In proceedings of the 20th international conference on Discrete Geometry for Computer Imagery (DGCI), 2017.

F. Nysjö, P. Olsson, F. Malmberg, I. B. Carlbom, I. Nyström
Using Anti-Aliased Signed Distance Fields for Generating Surgical Guides and Plates from CT Images
Proceedings of WSCG 2017.

Filip Malmberg, Robin Strand, Joel Kullberg
Interactive Deformation of Volume Images for Image Registration
Interactive Medical Image Computing (IMIC), a MICCAI 2015 workshop , 2015. (PDF)

Bettina Selig, Filip Malmberg, Cris L. Luengo Hendriks
Fast Evaluation of the Robust Stochastic Watershed
In proceedings of the 12th International Symposium on Mathematical Morphology (ISMM), 2015.

Filip Malmberg, Bettina Selig, Cris L. Luengo Hendriks
Exact Evaluation of Stochastic Watersheds: From Trees to General Graphs
In proceedings of the 18th international conference on Discrete Geometry for Computer Imagery (DGCI), 2014.

Robin Strand, Filip Malmberg, Punam K. Saha, Elisabeth Linnér
The Minimum Barrier Distance - Stability to seed point position
In proceedings of the 18th international conference on Discrete Geometry for Computer Imagery (DGCI), 2014.

Johan Nysjö, Albert Christersson, Ida-Maria Sintorn, Ingela Nyström, Sune Larsson, Filip Malmberg
Precise 3D Angle Measurements in CT Wrist Images
In Proceedings of the 17th International Conference on Image Analysis and Processing (ICIAP), 2013.

Filip Malmberg and Robin Strand
Faster Fuzzy Connectedness via Precomputation
In proceedings of the 11th International Symposium on Mathematical Morphology (ISMM). 2013.

Filip Malmberg, Robin Strand, Richard Nordenskjöld, Joel Kullberg, Ewert Bengtsson
Smart Paint - A New Interactive Segmentation Method Applied to MR Prostate Segmentation
In Prostate MR Image Segmentation Grand Challenge (PROMISE'12), a MICCAI 2012 Workshop. 2012. (PDF).

Filip Malmberg, Robin Strand, Richard Nordenskjöld, Joel Kullberg
Seeded Segmentation Based on Object Homogeneity
In Proceedings of International Conference on Pattern Recognition (ICPR), 2012.

Johan Nysjö, Albert Christersson, Filip Malmberg, Ida-Maria Sintorn, Ingela Nyström
Towards User-Guided Quantitative Evaluation of Wrist Fractures in CT Images
In Proceedings of International Conference on Computer Vision and Graphics (ICCVG), 2012.

Ingela Nyström, Johan Nysjö, Filip Malmberg
Visualization and Haptics for Interactive Medical Image Analysis: Image Segmentation in Cranio-Maxillofacial Surgery Planning
In Proceedings of the 2nd International Visual Informatics Conference (IVIC), Selangor, Malaysia, 2011.

Filip Malmberg, Robin Strand, Ingela Nyström
Generalized Hard Constraints for Graph Segmentation
In Proceedings of the 17th Scandinavian Conference on Image Analysis (SCIA 2011). (PDF).

Filip Malmberg
Image Foresting Transform: On-the-fly Computation of Segmentation Boundaries
In Proceedings of the 17th Scandinavian Conference on Image Analysis (SCIA 2011). (PDF).

Filip Malmberg, Ingela Nyström, Andrew Mehnert, Craig Engstrom and Ewert Bengtsson
Relaxed Image Foresting Transforms for Interactive Volume Image Segmentation.
Proceedings of SPIE Medical Imaging 2010, San Diego, USA. (PDF)

Filip Malmberg, Joakim Lindblad, Ingela Nyström
Sub-pixel Segmentation with the Image Foresting Transform
In Proceedings of the 13th International Workshop on Combinatorial Image Analysis (IWCIA'09), Playa del Carmen, Mexico, 2009. (PDF)

Ingela Nyström, Filip Malmberg, Erik Vidholm, and Ewert Bengtsson.
Segmentation and Visualization of 3D Medical Images through Haptic Rendering
In V. Krasnoproshin, S. Ablameyko, R. Sadykhov, eds., Proceedings of the 10th International Conference on Pattern Recognition and Information Processing (PRIP 2009), pages 43-48. Publishing Center of BSU, Minsk, Belarus, 2009.

Filip Malmberg, Catherine Östlund, Gunilla Borgefors
Binarization of Phase Contrast Volume Images of Fibrous Materials: A Case Study
In Proceedings of International Conference on Computer Vision Theory and Applications (VISAPP 2009), Lisboa, Portugal, 2009. (PDF)

R. Strand, F. Malmberg, S. Svensson.
Minimal Cost-Path for Path-Based Distances
In Proceedings of 5th International Symposium on Image and Signal Processing and Analysis (ISPA 2007), Istanbul, Turkey, 2007. (PDF)

F. Malmberg, E. Vidholm, and I. Nyström.
A 3D live-wire segmentation method for volume images using haptic interaction
In Proceedings of Discrete geometry for computer imagery 2006 (DGCI'06), pp. 663-673. Szeged, Hungary. (PDF)

Other conference publications

Filip Malmberg, Robin Strand, Håkan Ahlström, Joel Kullberg
A Toolbox for Non-parametric Deformable Registration of Volume Images
In Proceedings of Swedish symposium on image analysis 2016 (SSBA'16).

Filip Malmberg, Camilla Sandberg-Melin, Per G. Söderberg
Estimating a structural bottle neck for eye-brain transfer of visual information from 3D-volumes of the optic nerve head from a commercial OCT device
Proc. SPIE 9693, Ophthalmic Technologies XXVI, 96930N (March 4, 2016)

Per G. Söderberg, Filip Malmberg, Camilla Sandberg-Melin
Analysis of the variation in OCT measurements of a structural bottle neck for eye-brain transfer of visual information from 3D-volumes of the optic nerve head, PIMD-Average [0;2Π]
Proc. SPIE 9693, Ophthalmic Technologies XXVI, 96930O (March 4, 2016)

Filip Malmberg, Robin Strand, Bettina Selig, Cris L. Luengo Hendriks
Exact Stochastic Watersheds — A Summary of Recent Advances.
In Proceedings of Swedish symposium on image analysis 2015 (SSBA'15).

Filip Malmberg, Robin Strand, Richard Nordenskjöld, Joel Kullberg
An interactive Tool for Deformable Registration of Volume Images.
In Proceedings of Swedish symposium on image analysis 2014 (SSBA'14).

Filip Malmberg, Robin Strand
Towards Faster Fuzzy Connectedness.
In Proceedings of Swedish symposium on image analysis 2013 (SSBA'13).

Filip Malmberg
Image Foresting Transform: On-the-fly Computation of Region Boundaries.
In Proceedings of Swedish symposium on image analysis 2010 (SSBA'10), pp. 51-54.

Filip Malmberg, Ingela Nyström.
Interactive Segmentation with Relaxed Image Foresting Transforms.
In Proceedings of Swedish symposium on image analysis 2009(SSBA'09), pp. 17-20.

Filip Malmberg, Catherine Östlund, Gunilla Borgefors.
Graph Cut Based Segmentation of Phase Contrast Volume Images of Fibrous Materials.
In Proceedings of Swedish symposium on image analysis 2008 (SSBA'08), pp. 131-134.

Filip Malmberg, Joakim Lindblad, Catherine Östlund, Karin Almgren, Kristoffer Gamstedt.
An Automated Image Analysis Method for Measuring Fibre Contact in Fibrous and Composite Materials.
In Proceedings of 13th European Conference on Composite Materials (ECCM 13).

Maria Axelsson, Gary Chinga, Stina Svensson, Per Nygård, Filip Malmberg, Olav Solheim, Joakim Lindblad, Gunilla Borgefors.
Detailed quantification of the 3D structure of newsprints in X-ray synchrotron radiation microtomography images
Progress in Paper Physics Seminar, Oxford, Ohio, 2006

Karin Bogren, Kristofer Gamstedt, Fredrik Berthold, Mikael Lindström, Per Nygård, Filip Malmberg, Joakim Lindblad, Maria Axelsson, Stina Svensson, Gunilla Borgefors.
Stress transfer and failure in pulpfibre reinforced composites: Effects of microstructure characterized by Xray microtomography
Progress in Paper Physics Seminar, Oxford, Ohio, 2006

Per Nygård, Per Gradin, Øyvind Gregersen, Joakim Lindblad, Maria Axelsson, Stina Svensson, Filip Malmberg, Gunilla Borgefors.
Damage Mechanisms in Paper
Progress in Paper Physics Seminar, Oxford, Ohio, 2006

F. Malmberg, E. Vidholm, and I. Nyström.
Live-wire based interactive segmentation of volume images using haptics
In Proceedings of Swedish symposium on image analysis 2006 (SSBA'06), pp. 57-60.

Popular science

Erik Vidholm, Filip Malmberg, Ingela Nyström
Läkarens känsel hjälper datorn
Forskning & Framsteg, nr 1, 2009, pp. 62

Licentiate thesis

Segmentation and Analysis of Volume Images, with Applications