Graduate courses

1. Research Methodology for Information Technology, 4hp 
   Examiner: Gunilla Borgefors 
   Lecturer(s): Gunilla Borgefors, Ulrika Haak 
   Period: 140424-0630 
   Venue: The course was given at CBA.
   Description: The goal is to give general and useful knowledge about how to become a good and published researcher in information technology and/or various applications thereof. The first part consists of five traditional lectures on general themes. The second part is a series of seminars held by the participants, describing a relevant scientific conference or journal and making an oral and a written report. 
   Comment: The written reports are collected in CBA Internal Report No. 53.
2. Basic Image Analysis: Focused on Microscopy Applications, 3hp 
   Cris Luengo, Ida-Maria Sintorn, Carolina Wählby 
   Period: 140917-1009
   Venue: The course was held at KI in Huddinge. 
   Description: This postgraduate course in Basic Image Analysis was organized administered by the Regenerative Medicine Doctoral Program for PhD students at Karolinska Institutet and KTH.
   Comment: PhD level course: 9 lectures, 2 computer exercises (Fiji, CellProfiler), 1 week project on own data

3. Scientific Data Presentation, 2hp
   Gunilla Borgefors, Cris Luengo
   Period: 141008-1105
   Venue: The course was given at CBA.
   Description: The goal of the course is to give PhD students the ability to effectively present the data resulting from their experiments. The course covered different forms of graphs and tables for one and two- dimensional sampled data, categorical data, discrete values, etc.; certain aspects of human perception relevant to displaying data, including colour perception; the need to highlight the story in the data, refraining from displaying the non-essential things (without, of course, misrepresenting the data); and how to use drawing tools such as Illustrator or Inkscape to edit figures generated by Excel, MATLAB, or any other graphing tool.
   Comment: Funded by FUN, Faculty of Science and Technology

4. Live Cell Imaging, 3hp 
   Ida-Maria Sintorn 
   Venue: The course was held at KI in Huddinge. 
   Period: 141013-1013
   Description: Basic principles of fluorescence microscopy and live cell imaging. Confocal Laser Scanning Microscopy Deconvolution fluorescence Microscopy Basic principles of advanced fluorescence techniques. Design and perform live cell imaging experiments. Data analysis and presentation.
5. Scientific Visualization Workshop, 1hp 
   Anders Hast, Johan Nysjö, Pontus Olsson 
   Period: 141127-1128
   Venue: The workshop was given at CBA.
   Description: A workshop for PhDs and other researchers arranged by SNIC-UPPMAX and SeSE.

6. Classical & Modern Papers 
   PhD students at CBA, Cris Luengo 
   Period: During the whole year
   Venue: The course was given at CBA.
   Description: Presentations and discussions of classical or modern papers in image processing.