Recent Abstracts of C.L. Luengo Hendriks

2009

S.V.E. Keränen, A.H. DePace, C.L. Luengo Hendriks, C.C. Fowlkes, P. Arbelaez, B. Ommer, T. Brox, C. Henriquez, Z. Wunderlich, K. Eckenrode, B. Fisher, A. Hammonds, S.E. Celniker, J. Malik, D.W. Knowles, M.B. Eisen, M.D. Biggin, Computational analysis of quantitative changes in gene expression and embryo morphology between species, 74th Symposium: Evolution - The Molecular Landscape, Cold Spring Harbor, New York, May 27-June 1, 2009. (Poster presentation)
W. Fisher, R. Weiszmann, A. Hammonds, S. MacArthur, X. Li, A.H. DePace, S.V.E. Keränen, C. Henriquez, C.L. Luengo Hendriks, C.C. Fowlkes, D.W. Knowles, J. Malik, B. Berman, M.B Eisen, M.D. Biggin, S. Celniker, Identification of cis-regulatory elements using computational and experimental approaches, 50th Annual Drosophila Research Conference, Chicago, Illinois, March 4-8, 2009. (Poster presentation)
A.H. DePace, C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, C. Henriquez, L. Simirenko, K. Eckenrode, M. Meyer, D.W. Knowles, M.D. Biggin, J. Malik, M.B. Eisen, Comparison of gene expression at cellular resolution in Drosophila reveals distinct transcriptional niches between species, 50th Annual Drosophila Research Conference, Chicago, Illinois, March 4-8, 2009. (Oral presentation)

2008

C.L. Luengo Hendriks, S.V.E. Keränen, P. Arbelaez, G.H. Weber, C.C. Fowlkes, C.N. Henriquez, D.W. Kaszuba, B. Hamann, J. Malik, M.D. Biggin and D.W. Knowles, A Morphology and Gene Expression Atlas of Drosophila Embryogenesis, 49th Annual Drosophila Research Conference, San Diego, California, April 2-6, 2008. Text (Oral presentation)
M.B. Eisen, C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, C.N. Henriquez, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, J. Malik, D.W. Knowles, M.D. Biggin, A.H. DePace, A cellular resolution atlas of gene expression in Drosophila pseudoobscura reveals interspecies variation in embryonic patterning, 49th Annual Drosophila Research Conference, San Diego, California, April 2-6, 2008. Text (Poster presentation)
S.V.E. Keränen, B.D. Pfeiffer, B. Fisher, A. Hammonds, C.L. Luengo Hendriks, C.C. Fowlkes, C.N. Henriquez, D.W. Knowles, J. Malik, M.B. Eisen, M.D. Biggin and S. Celniker, Quantitative 3D Analysis of Expression Patterns Driven by cis-Regulatory Modules, 49th Annual Drosophila Research Conference, San Diego, California, April 2-6, 2008. Text (Poster presentation)
C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, B. Hamann, M.B. Eisen, J. Malik, M.D. Biggin and D.W. Knowles, Berkeley Drosophila Transcription Network Project: Morphology and gene expression atlas, Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining, Santa Barbara, California, January 17-18, 2008. PDF (Oral presentation)

2007

D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, B. Hamann, M.B. Eisen, J. Malik and M.D. Biggin, Berkeley Drosophila Transcription Network Project: Morphology and gene expression atlas, Genome Informatics, Cold Spring Harbor, New York, November 1-5, 2007. (Oral presentation)
D. Sudar, C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Imaging and visualization for 3-D gene expression analyses in Drosophila embryos, Microscopy and Microanalysis 2007, Fort Lauderdale, Florida, August 5-9, 2007. (Poster presentation)
S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, A.H. DePace, C. Henriquez, D.W. Kaszuba, B. Hamann, M.B. Eisen, J. Malik, D. Sudar, M.D. Biggin and D.W. Knowles, Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21-25, 2007. (Oral presentation, Highlights Track)
S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21-25, 2007. (Poster presentation)
C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, 48th Annual Drosophila Research Conference, Philadelphia, Pennsylvania, March 7-11, 2007. Text (Poster presentation)
A.H. DePace, S. MacArthur, D. Pollard, V. Iyer, S.V.E. Keränen, C. Henriquez, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, J. Malik, D.W. Knowles, M.D. Biggin and M.B. Eisen, 3-Dimensional quantitative analysis of gene expression in multiple Drosophila species, 48th Annual Drosophila Research Conference, Philadelphia, Pennsylvania, March 7-11, 2007. Text (Poster presentation)
S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, Computational Cell Biology, Cold Spring Harbor, New York, March 6-9, 2007. (Poster presentation)

2006

S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, A.H. DePace, C.N. Henriquez, H. Peng, D. Sudar, B. Hamann, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms, Integrating Evolution, Development and Genomics, Berkeley, California, May 31-June 2, 2006. (Poster presentation)
C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, M.-Y. Huang, O. Rübel, B. Hamann, D. Sudar, J. Malik, M.D. Biggin and D.W. Knowles, Quantitative live imaging describes morphogenetic nuclear movements in early Drosophila embryo, ISAC XXIII International Congress, Québec City, Canada, May 20-24, 2006. Text (Oral presentation)
A.H. DePace, S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, B. Hamann, J. Malik, D.W. Knowles, M.D. Biggin and M.B. Eisen, Building a 3-dimensional atlas of gene expression in multiple Drosophila species, The Biology of Genomes, Cold Spring Harbor, New York, May 10-14, 2006. (Oral presentation)
C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, H. Peng, A.H. DePace, L. Simirenko, B. Hamann, D. Sudar, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, Quantitative live imaging describes morphogenetic nuclear movements prior to gastrulation, 47th Annual Drosophila Research Conference, Houston, Texas, March 29-April 2, 2006. Text (Poster presentation, presented orally at the Live Cell Imaging workshop)
D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, H. Peng, A.H. DePace, L. Simirenko, B. Hamann, D. Sudar, J. Malik, M.B. Eisen and M.D. Biggin, Berkeley Drosophila Transcription Network Project: 3D blastoderm gene expression atlas, 47th Annual Drosophila Research Conference, Houston, Texas, March 29-April 2, 2006. Text (Oral presentation)
C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, B. Hamann, M.B. Eisen, D. Sudar, D.W. Knowles, M.D. Biggin and J. Malik, Complex interactions between d/v and a/p patterning systems before gastrulation revealed by a 3-D atlas of gene expression patterns, 47th Annual Drosophila Research Conference, Houston, Texas, March 29-April 2, 2006. Text (Oral presentation)
S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, D. Sudar, B. Hamann, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms, 47th Annual Drosophila Research Conference, Houston, Texas, March 29-April 2, 2006. Text (Poster presentation)
S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, A.H. DePace, H. Peng, M.B. Eisen, B. Hamann, J. Malik, D.W. Knowles, D. Sudar and M.D. Biggin, Spatio-temporal expression analysis at cellular resolution in the Drosophila embryo reveals new dynamics of morphology and gene expression, Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor, New York, March 23-26, 2006. Text (Oral presentation)

2005

D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, H. Peng, A.H. DePace, B. Hamann, D. Sudar, M.B. Eisen, M.D. Biggin and J. Malik, Berkeley Drosophila Transcription Network Project: 3D blastoderm gene expression atlas, Genome Informatics, Cold Spring Harbor, New York, October 28-November 1, 2005. (Oral presentation)
C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, D. Sudar and J. Malik, Registering Drosophila embryos at cellular resolution to build a quantitative 3D map of gene expression patterns and morphology, CSB 2005 Workshop on BioImage Data Minning and Informatics, Palo Alto, California, August 2005. PDF (Oral presentation)
C.L. Luengo Hendriks, D.W. Knowles, S.V.E. Keränen, G.H. Weber, M.D. Biggin and D. Sudar, Automated delineation of cells and nuclei and quantification of gene expression in 3D images of whole Drosophila blastoderm embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30-April 3, 2005. Text (Poster presentation)
C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, D. Sudar and J. Malik, Building composite maps of gene expression patterns: registering morphology and gene expression between 3D representations of Drosophila embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30-April 3, 2005. Text (Poster presentation)
G.H. Weber, C.L. Luengo Hendriks, S.V.E. Keränen, S.E. Dillard and B. Hamann, Visualization tools for three-dimensional gene expression data in Drosophila, 46th Annual Drosophila Research Conference, San Diego, California, March 30-April 3, 2005. Text (Poster presentation)
S.V.E. Keränen, C.L. Luengo Hendriks, D. Sudar, M.D. Biggin and D.W. Knowles, Counting gene expressing nuclei in whole Drosophila blastoderm embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30-April 3, 2005. Text (Poster presentation)