Publications of C.L. Luengo Hendriks

See also my publication list and citation metrics in Google Scholar.

Papers

2017

• T. Asplund, C.L. Luengo Hendriks, M.J. Thurley and R. Strand, Mathematical morphology on irregularly sampled data in one dimension, Mathematical Morphology: Theory and Applications 2(1):1–24, 2017. DOI BibTeX
• F. Aeffner, K. Wilson, N.T. Martin, J.C. Black, C.L. Luengo Hendriks, B. Bolon, D. Rudmann, R. Gianani, S.R. Koegler, J. Krueger and G.D. Young, The "gold standard" paradox in digital image analysis: manual vs. automated scoring as "ground truth", Archives of Pathology & Laboratory Medicine 141(9):1267–1275, 2017. DOI BibTeX
• A. Fakhrzadeh, E. Spörndly-Nees, E. Ekstedt, L. Holm and C.L. Luengo Hendriks, New computerized staging method to analyze mink testicular tissue in environmental research, Environmental Toxicology and Chemistry 36(1):156–164. DOI BibTeX open access
• T. Joffre, K. Segerholm, C. Persson, S.L. Bardage, C.L. Luengo Hendriks and P. Isaksson, Characterization of interfacial stress transfer ability in acetylation-treated wood fibre composites using X-ray microtomography, Industrial Crops and Products 95:43–49, 2017. DOI BibTeX
• F. Malmberg, C.L. Luengo Hendriks and R. Strand, Exact evaluation of targeted stochastic watershed cuts, Discrete Applied Mathematics 216(pt.2):449–460, 2017. DOI BibTeX

2016

• T. Asplund, C.L. Luengo Hendriks, M.J. Thurley and R. Strand, Mathematical morphology on irregularly sampled signals, presented at: ACCV Workshop on Discrete Geometry and Mathematical Morphology for Computer Vision (LNCS proceedings information to come).
• T. Asplund, C.L. Luengo Hendriks, M.J. Thurley and R. Strand, A novel approach to mathematical morphology on one dimensional sampled signals, presented at: ICPR 2016 (IEEE proceedings information to come).
• T. Asplund and C.L. Luengo Hendriks, A faster, unbiased path opening by upper skeletonization and weighted adjacency graphs, IEEE Transactions on Image Processing 25(12):5589–5600, 2016. DOI BibTeX open access
• S. Borodulina, E.L.G. Wernersson, A. Kulachenko and C.L. Luengo Hendriks, Extracting fiber and network connectivity data using microtomography images of paper, Nordic Pulp & Paper Research Journal 31(3):469–478, 2016. DOI BibTeX
• J.O. Cadenas, G.M. Megson and C.L. Luengo Hendriks, Preconditioning 2D integer data for fast convex hull computations, PLOS ONE 11(3):e0149860, 2016. DOI BibTeX open access
• H.C. Hall, A. Fakhrzadeh, C.L. Luengo Hendriks and U. Fischer, Precision automation of cell type classification and sub-cellular fluorescence quantification from laser scanning confocal images, Frontiers in Plant Science 7:119, 2016. DOI BibTeX open access
  This paper is recommended by F1000 Prime (Faculty member David G Oppenheimer, March 15, 2016). WWW

2015

• V. Ćurić, S. Lefèvre and C.L. Luengo Hendriks, Adaptive hit or miss transform, in: Mathematical Morphology and Its Applications to Signal and Image Processing (Proceedings of the 12th International Symposium, ISMM 2015, Reykjavik, Iceland, May 27–29), LNCS 9082, pp. 741–752, Springer 2015. DOI BibTeX
• B. Selig, F. Malmberg and C.L. Luengo Hendriks, Fast evaluation of the robust stochastic watershed, in: Mathematical Morphology and Its Applications to Signal and Image Processing (Proceedings of the 12th International Symposium, ISMM 2015, Reykjavik, Iceland, May 27–29), LNCS 9082, pp. 705–716, Springer 2015. DOI BibTeX
• E. Spörndly-Nees, E. Ekstedt, U. Magnusson, A. Fakhrzadeh, C.L. Luengo Hendriks and L. Holm, Effect of pre-fixation delay and freezing on mink testicular endpoints for environmental research, PLOS ONE 10(5):e0125139, 2015. DOI BibTeX open access
• B. Selig, K.A. Vermeer, B. Rieger, T. Hillenaar and C.L. Luengo Hendriks, Fully automatic evaluation of the corneal endothelium from in vivo confocal microscopy, BMC Medical Imaging 15:13, 2015. DOI Data BibTeX Software open access

2014

• F. Malmberg, B. Selig and C.L. Luengo Hendriks, Exact evaluation of stochastic watersheds: from trees to general graphs, in: Discrete Geometry for Computer Imagery (Proceedings of the 18th IAPR International Conference, DGCI 2014, Siena, Italy, September 10–12), LNCS 8668, pp. 309–319, Springer 2014. DOI BibTeX
• F. Malmberg and C.L. Luengo Hendriks, An efficient algorithm for exact evaluation of stochastic watersheds, Pattern Recognition Letters 47:80–84, 2014. DOI BibTeX
• V. Ćurić, A. Landström, M.J. Thurley and C.L. Luengo Hendriks, Adaptive mathematical morphology – a survey of the field, Pattern Recognition Letters 47:18–28, 2014. DOI BibTeX
• J. Van den Bulcke, E.L.G. Wernersson, M. Dierick, D. Van Loo, B. Masschaele, L. Brabant, M.N. Boone, L. Van Hoorebeke, K. Haneca, A. Brun, C.L. Luengo Hendriks and J. Van Acker, 3D tree-ring analysis using helical X-ray tomography, Dendrochronologia 32(1):39–46, 2014. DOI BibTeX
• E.L.G. Wernersson, M.N. Boone, J. Van den Bulcke, L. Van Hoorebeke and C.L. Luengo Hendriks, Understanding phase contrast artefacts in micro computed absorption tomography, Proceedings SSBA 2014, Symposium on Image Analysis (Luleå, Sweden, March 11–12), Luleå University of Technology, 2014.

2013

• A. Fakhrzadeh, E. Spörndly-Nees, A. Kadkhodamohammadi, L. Holm and C.L. Luengo Hendriks, Epithelial cell segmentation in histological images of testicular tissue using graph-cut, in: A. Petrosino (ed.), Image Analysis and Processing, part II (Proceedings of the 17th International Conference on Image Analysis and Processing, Naples, Italy, September 9–13), LNCS 8157, pp. 201–208, Springer, 2013. DOI Erratum DOI BibTeX
• V. Ćurić and C.L. Luengo Hendriks, Salience-based parabolic structuring functions, in: C.L. Luengo Hendriks, G. Borgefors and R. Strand (eds.), Mathematical Morphology and Its Applications to Signal and Image Processing (Proceedings of the 11th International Symposium on Mathematical Morphology, Uppsala, Sweden, May 27–29), LNCS 7883, pp. 183–194, Springer, 2013. DOI BibTeX
• K.B. Bernander, K. Gustavsson, B. Selig, I.-M. Sintorn and C.L. Luengo Hendriks, Improving the stochastic watershed, Pattern Recognition Letters 34(9):993–1000, July 2013. DOI PDF (preprint) BibTeX Software
• C.L. Luengo Hendriks, Z.Q. Yu, A. Lecocq, T. Bakker, B. Locke, O. Terenius, Identifying all individuals in a honeybee hive – progress towards mapping all social interactions (extended abstract), Proceedings SSBA 2013, Symposium on Image Analysis (Gothenburg, Sweden, March 14–15), MedTech West/Chalmers University, 2013.
• E.L.G. Wernersson, M.N. Boone, J. Van den Bulcke, L. Van Hoorebeke and C.L. Luengo Hendriks, Postprocessing method for reducing phase effects in reconstructed microcomputed-tomography data, Journal of the Optical Society of America A 30(3):455–461, 2013. DOI BibTeX
  Republished in Virtual Journal for Biomedical Optics 8(4):455, May 2013. OpticsInfoBase
• T. Joffre, E.L.G. Wernersson, A. Miettinen, C.L. Luengo Hendriks and E.K. Gamstedt, Swelling of cellulose fibres in composite materials: constraint effects of the surrounding matrix, Composites Science and Technology 74:52–59, 2013. DOI BibTeX

2012

• A. Fakhrzadeh, E. Spörndly-Nees, L. Holm and C.L. Luengo Hendriks, Analyzing tubular tissue in histopathological thin sections, International Conference on Digital Image Computing Techniques and Applications (DICTA 2012, Fremantle, Western Australia, December 3–5), pp. 1–6, IEEE Publications, 2012. DOI PDF BibTeX
• C.L. Luengo Hendriks, Z.Q. Yu, A. Lecocq, T. Bakker, B. Locke, O. Terenius, Identifying all individuals in a honeybee hive – progress towards mapping all social interactions (extended abstract), in: R. Fisher, J. Hallam and B. Boom (eds.), Proceedings of the Visual observation and analysis of animal and insect behavior 2012 workshop (Tsukuba, Japan, November 11, in conjunction with ICPR), 2012. PDF BibTeX
• V. Ćurić, C.L. Luengo Hendriks and G. Borgefors, Salience adaptive structuring elements, IEEE Journal of Selected Topics in Signal Processing 6(7):809–819, 2012. DOI BibTeX
• A. Miettinen, C.L. Luengo Hendriks, G. Chinga-Carrasco, E.K. Gamstedt and M. Kataja, A non-destructive X-ray microtomography approach for measuring fibre length in short-fibre composites, Composites Science and Technology 72(15):1901–1908, 2012. DOI BibTeX
• V. Ćurić and C.L. Luengo Hendriks, Adaptive structuring elements based on salience information, in: L. Bolc, R. Tadeusiewicz, L.J. Chmielewski, K. Wojciechowski (eds.), Computer Vision and Graphics (Proceedings of the International Conference on Computer Vision and Graphics, Warsaw, Poland, September 24–26), LNCS 7594, pp. 321–328, Springer, 2012. DOI BibTeX
• B. Selig, C.L. Luengo Hendriks, S. Bardage, G. Daniel and G. Borgefors, Automatic measurement of compression wood cell attributes in fluorescence microscopy images, Journal of Microscopy 246(3):298–308, 2012. DOI BibTeX
• B. Selig and C.L. Luengo Hendriks, Stochastic watershed – an analysis, Proceedings SSBA 2012, Symposium on Image Analysis (Stockholm, Sweden, March 8–9), KTH Royal Institute of Technology, 2012.
• V. Ćurić, C.L. Luengo Hendriks and G. Borgefors, Adaptive structuring elements based on salience distance transform, Proceedings SSBA 2012, Symposium on Image Analysis (Stockholm, Sweden, March 8–9), KTH Royal Institute of Technology, 2012.
• A. Fakhrzadeh, E. Spörndly-Nees, L. Holm and C.L. Luengo Hendriks, Automated measurement of epithelial height of testicular tissue, Proceedings SSBA 2012, Symposium on Image Analysis (Stockholm, Sweden, March 8–9), KTH Royal Institute of Technology, 2012.

2011

• C.C. Fowlkes, K.B. Eckenrode, M.D. Bragdon, M. Meyer, Z. Wunderlich, L. Simirenko, C.L. Luengo Hendriks, S.V.E. Keränen, C. Henriquez, D.W. Knowles, M.D. Biggin, M.B. Eisen and A.H. DePace, A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila, PLoS Genetics 7(10):e1002346, October 2011. DOI PDF BibTeX open access
• G. Chinga-Carrasco, A. Miettinen, C.L. Luengo Hendriks, E.K. Gamstedt and M. Kataja, Structural characterisation of kraft pulp fibres and their nanofibrillated materials for biodegradable composite applications, in: J. Cuppoletti (ed.), Nanocomposites and Polymers with Analytical Methods, ISBN 978-953-307-352-1, InTech, 2011. InTechOpen PDF BibTeX open access
• C.L. Luengo Hendriks, P. Malm and E. Bengtsson, Rapid prototyping of image analysis applications, in: G. Dougherty (ed.), Medical Image Processing: Techniques and Applications, ISBN 978-1-4419-9769-2, Biological and Medical Physics, Biomedical Engineering Series, Springer, 2011. DOI BibTeX
• E.L.G Wernersson, C.L. Luengo Hendriks and A. Brun, Accurate estimation of Gaussian and mean curvature in volumetric images, in: International Conference on 3D Imaging, Modeling, Processing, Visualization, and Transmission, 3DIMPVT 2011 (Hangzhou, China, May 16–19), pp. 312–317, IEEE Publications, 2011. DOI BibTeX
• E.L.G. Wernersson, C.L. Luengo Hendriks and A. Brun, Calculating curvature from orientation fields in volumetric images, Proceedings SSBA 2011, Symposium on Image Analysis (Linköping, Sweden, March 17–18), Linköping University, 2011.
• C.M. Miles, S.E. Lott, C.L. Luengo Hendriks, M.Z. Ludwig, Manu, C.L. Williams and M. Kreitman, Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster, Evolution 65(1):33–42, 2011. DOI BibTeX

2010

• C.L. Luengo Hendriks, Revisiting priority queues for image analysis, Pattern Recognition 43(9):3003–3012, 2010. DOI PDF (preprint) BibTeX Software
• C.L. Luengo Hendriks, Constrained and dimensionality-independent path openings, IEEE Transactions on Image Processing 19(6):1587–1595, 2010. DOI PDF (preprint) BibTeX Software
• O. Rübel, S. Ahern, E.W. Bethel, M.D. Biggin, H. Childs, E. Cormier-Michel, A. DePace, M.B. Eisen, C.C. Fowlkes, C.G.R. Geddes, H. Hagen, B. Hamann, M.-Y. Huang, S.V.E. Keränen, D.W. Knowles, C.L. Luengo Hendriks, J. Malik, J. Meredith, P. Messmer, Prabhat, D. Ushizima, G.H. Weber and K. Wu, Coupling visualization and data analysis for knowledge discovery from multi-dimensional scientific data, in: International Conference on Computational Science, ICCS 2010 (Amsterdam, The Netherlands, May 31–June 2), Procedia Computer Science 1(1):1751–1758, Elsevier, 2010. DOI BibTeX
• C.L. Luengo Hendriks, Path openings and their applications, Proceedings SSBA 2010, Symposium on Image Analysis (Uppsala, Sweden, March 11–12) pp. 79–82, Centre for Image Analysis, 2010.
• O. Rübel, G.H. Weber, M.-Y. Huang, E.W. Bethel, M.D. Biggin, C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.B. Eisen, D.W. Knowles, J. Malik, H. Hagen and B. Hamann, Integrating data clustering and visualization for the analysis of 3D gene expression data, IEEE/ACM Transactions on Computational Biology and Bioinformatics 7(1):64–79, 2010. DOI BibTeX

2009

• E.L.G Wernersson, C.L. Luengo Hendriks and A. Brun, Generating synthetic μCT images of wood fibre materials, in: P. Zinterhof, S. Lončarić, A. Uhl and A. Carini (eds.), Proceedings of the 6th International Symposium on Image and Signal Processing and Analysis (Salzburg, Austria, September 16–18), pp. 365–370, IEEE Publications, 2009. IEEEXplore PDF BibTeX
  Recipient of best paper award.
• E.L.G Wernersson, A. Brun and C.L. Luengo Hendriks, Segmentation of wood fibres in 3D CT images using graph cuts, in: P. Foggia, C. Sansone and M. Vento (eds.), Image Analysis and Processing – ICIAP 2009 (Proceedings of the 15th International Conference on Image Analysis and Processing, Vietri sul Mare, Italy, September 8–11), LNCS 5716, pp. 92–102, Springer, 2009. DOI PDF BibTeX
• B. Selig, C.L. Luengo Hendriks, S. Bardage and G. Borgefors, Segmentation of highly lignified zones in wood fibre cross-sections, in: A.-B. Salberg, J.Y. Hardeberg and R. Jenssen (eds.), Proceedings of the 16th Scandinavian Conference on Image Analysis, SCIA 2009 (Oslo, Norway, June 15–18), LNCS 5575, pp. 369–378, Springer, 2009. DOI PDF BibTeX
• O. Tenow, T. Fagerström and C. Luengo, Epimeletic behaviour in airborne Common Swift Apus apus (contd.): indication of an interspecies “spill-over” reaction?, Ornis Svecica 19(4):233–236, 2009.
• G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C.C. Fowlkes, S.V.E. Keränen, C.L. Luengo Hendriks, H. Hagen, D.W. Knowles, J. Malik, M.D. Biggin and B. Hamann, Visual exploration of three-dimensional gene expression using physical views and linked abstract views, IEEE/ACM Transactions on Computational Biology and Bioinformatics 6(2):296–309, 2009. DOI BibTeX
• E.L.G. Wernersson, A. Brun and C.L. Luengo Hendriks, Closing pores and segmenting individual fibres in 3D images of wood fibre composites using curvature information and graph cuts, Proceedings SSBA'09, Symposium on Image Analysis (Halmstad, Sweden, March 19–20), pp. 113–116, Halmstad University, 2009.
• B. Selig, C.L. Luengo Hendriks and G. Borgefors, Measuring distribution of lignin in wood fibre cross-sections, Proceedings SSBA'09, Symposium on Image Analysis (Halmstad, Sweden, March 19–20), pp. 5–8, Halmstad University, 2009.

2008

• C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, G.H. Weber, O. Rübel, M.-Y. Huang, S. Chatoor, A.H. DePace, L. Simirenko, C. Henriquez, A. Beaton, R. Weiszmann, S. Celniker, B. Hamann, D.W. Knowles, M.D. Biggin, M.B. Eisen and J. Malik, A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm, Cell 133(2):364–374, 2008. DOI PDF BibTeX
  This paper is highlighted in Developmental Cell 14(5):639–640, 2008. DOI PDF
  This paper is highlighted in Nature Methods 5(6):466, 2008. DOI PDF
• X. Li, S. MacArthur, R. Bourgon, D. Nix, D.A. Pollard, V.N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C.L. Luengo Hendriks, H.C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S.E. Celniker, D.W. Knowles, T. Gingeras, T.P. Speed, M.B. Eisen and M.D. Biggin, Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm, PLoS Biology 6(2):e27, 2008. DOI PDF BibTeX open access
  This paper is highlighted in Nature Reviews Genetics 9(4):247, 2008. DOI PDF

2007

• C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin and D.W. Knowles, Automatic channel unmixing for high-throughput quantitative analysis of fluorescence images, Optics Express 15(19):12306–12317, 2007. DOI PDF BibTeX Software open access
• C.L. Luengo Hendriks, G.M.P. van Kempen and L.J. van Vliet, Improving the accuracy of isotropic granulometries, Pattern Recognition Letters 28(7):865–872, 2007. DOI PDF BibTeX Software
• C.L. Luengo Hendriks and D.W. Knowles, Comments on the paper “A novel 3D wavelet-based filter for visualizing features in noisy biological data,” by Moss et al., Journal of Microscopy 225(1):104–107, 2007. DOI PDF BibTeX Software
• M.-Y. Huang, O. Rübel, G.H. Weber, C.L. Luengo Hendriks, M.D. Biggin, H. Hagen and B. Hamann, Segmenting gene expression patterns of early-stage Drosophila embryos, in: L. Linsen, H. Hagen and B. Hamann (eds.), Visualization in Medicine and Life Sciences, Mathematics and Visualization Series, pp. 313–328, Springer-Verlag, Heidelberg, 2007. DOI PDF BibTeX

2006

• S.V.E. Keränen*, C.C. Fowlkes*, C.L. Luengo Hendriks** These authors have contributed equally to this work., D. Sudar, D.W. Knowles, J. Malik and M.D. Biggin, Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics, Genome Biology, 7:R124, 2006. DOI PDF BibTeX open access
• C.L. Luengo Hendriks*, S.V.E. Keränen** These authors have contributed equally to this work., C.C. Fowlkes, L. Simirenko, G.H. Weber, A.H. DePace, C.N. Henriquez, D.W. Kaszuba, B. Hamann, M.B. Eisen, J. Malik, D. Sudar, M.D. Biggin and D.W. Knowles, Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline, Genome Biology, 7:R123, 2006. DOI PDF BibTeX Software Data open access
  This paper and its companion are highlighted in Nature Reviews Genetics 8(2):88–89, 2007. DOI PDF
• O. Rübel, G.H. Weber, S.V.E. Keränen, C.C. Fowlkes, C.L. Luengo Hendriks, L. Simirenko, N.Y. Shah, M.B. Eisen, M.D. Biggin, H. Hagen, D. Sudar, J. Malik, D.W. Knowles and B. Hamann, PointCloudXplore: Visual analysis of 3D gene expression data using physical views and parallel coordinates, in: B.C. Santos, T. Ertl and K. Joy (eds.), Data Visualization 2006 (Proceedings of the Eurographics/IEEE-VGTC Symposium on Visualization, Lisbon, Portugal, May), 2006. DOI PDF BibTeX
• O. Rübel, G.H. Weber, S.V.E. Keränen, C.C. Fowlkes, C.L. Luengo Hendriks, L. Simirenko, N.Y. Shah, M.B. Eisen, M.D. Biggin, H. Hagen, D. Sudar, J. Malik, D.W. Knowles and B. Hamann, PointCloudXplore: Visual analysis of 3D gene expression data, in: H. Hagen, A. Kerren and P. Dannenmann (eds.), Visualization of Large and Unstructured Data Sets, Lecture Notes in Informatics, vol. S-4, pp. 107–117, Gesellschaft für Informatik, Bonn, 2006. PDF BibTeX

2005

• C.L. Luengo Hendriks, M. van Ginkel, P.W. Verbeek and L.J. van Vliet, The generalized Radon transform: sampling, accuracy and memory considerations, Pattern Recognition 38(12):2494–2505, 2005. DOI PDF BibTeX
• C.L. Luengo Hendriks and L.J. van Vliet, Using line segments as structuring elements for sampling-invariant measurements, IEEE Transactions on Pattern Analysis and Machine Intelligence 27(11):1826–1831, 2005. DOI PDF BibTeX Software
• C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, D. Sudar and J. Malik, Registering Drosophila embryos at cellular resolution to build a quantitative 3D atlas of gene expression patterns and morphology (extended abstact), in: Proceedings of the 2005 IEEE Computational Systems Bioinformatics Conference Workshops (Stanford, California, August 8–12), pp. 354–357, 2005. DOI PDF BibTeX
• G.H. Weber, C.L. Luengo Hendriks, S.V.E. Keränen, S.E. Dillard, D.Y. Ju, D. Sudar and B. Hamann, Visualization for validation and improvement of three-dimensional segmentation algorithms, in: K. Brodlie, D. Duke and K.I. Joy (eds.), Data Visualization 2005 (Proceedings of the Eurographics/IEEE VGTC Symposium on Visualization, Leeds, United Kingdom, June 1–3), 2005. DOI PDF BibTeX
• T.Q. Pham, M. Bezuijen, L.J. van Vliet, K. Schutte and C.L. Luengo Hendriks, Performance of optimal registration estimators, in: Z. Rahman, R.A. Schowengerdt and S.E. Reichenbach (eds.), Visual Information Processing XIV (SPIE Defense and Security Symposium, Orlando, Florida, March 29–April 1), Proceedings SPIE 5817, pp. 133–144, 2005. DOI PDF BibTeX

2004

• P.W. de Bont, C.L. Luengo Hendriks, G.M.P. van Kempen and R. Vreeker, Time evolution of phase separating milk protein and amylopectin mixtures, Food Hydrocolloids 18(6):1023–1031, 2004. DOI PDF BibTeX

2003

• C.L. Luengo Hendriks and L.J. van Vliet, Discrete morphology with line structuring elements, in: N. Petkov and M.A. Westenberg (eds.), Proceedings of the 10th International Conference, CAIP 2003 (Groningen, The Netherlands, August 25–27), LNCS 2756, pp. 722–729, Springer, 2003. DOI PDF BibTeX Software
  Also presented (with only slight changes) in: S. Vassiliadis, L.M.J. Florack, J.W.J. Heijnsdijk and A. van der Steen (eds.), Proceedings 9th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands, June 4–6), pp. 169–176, ASCI, Delft, 2003. PDF BibTeX
• C.L. Luengo Hendriks, M. van Ginkel, P.W. Verbeek and L.J. van Vliet, The generalized Radon transform: sampling and memory considerations, in: N. Petkov and M.A. Westenberg (eds.), Proceedings of the 10th International Conference, CAIP 2003 (Groningen, The Netherlands, August 25–27), LNCS 2756, pp. 681–688, Springer, 2003. DOI PDF BibTeX
• C.L. Luengo Hendriks and L.J. van Vliet, Basic morphological operations, band-limited images and sampling, in: L.D. Griffin and M. Lillholm (eds.), Proceedings of the 4th International Conference, Scale-Space 2003 (Isle of Skye, United Kingdom, June 10–12), LNCS 2695, pp. 313–324, Springer, 2003. DOI PDF BibTeX Software
• G. van Dalen, H. Blonk, H. van Aalst and C.L. Luengo Hendriks, 3-D imaging of foods using X-ray microtomography, Imaging & Microscopy 3:18–21, 2003. PDF References BibTeX

2001

• C.L. Luengo Hendriks and L.J. van Vliet, Segmentation-free estimation of length distributions using sieves and RIA morphology, in: M. Kerckhove (ed.), Proceedings Third International Conference, Scale-Space 2001 (Vancouver, Canada, July 7–8), LNCS 2106, pp. 389–406, Springer, 2001. DOI PDF BibTeX
  Also presented (with less space constraints) in: R.L. Lagendijk, J.W.J. Heijnsdijk, A.D. Pimentel and M.H.F. Wilkinson (eds.), Proceedings 7th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands, May 30–June 1), pp. 129–136, ASCI, Delft, 2001. PDF BibTeX
• C.L. Luengo Hendriks and L.J. van Vliet, A rotation-invariant morphology for shape analysis of anisotropic objects and structures, in: C. Arcelli, L.P. Cordella and G. Sanniti di Baja (eds.), Proceedings 4th International Workshop on Visual Form (Capri, Italy, May 28–30), LNCS 2059, pp. 378–387, Springer, 2001. DOI PDF BibTeX

2000

• C.L. Luengo Hendriks and L.J. van Vliet, Morphological scale-space to differentiate microstructures of food products, in: L.J. van Vliet, J.W.J. Heijnsdijk, T. Kielmann and P.M.W. Knijnenburg (eds.), Proceedings 6th Annual Conference of the Advanced School for Computing and Imaging (Lommel, Belgium, June 14–16), pp. 289–293, ASCI, Delft, 2000. PDF BibTeX Software
• C.L. Luengo Hendriks and L.J. van Vliet, Improving resolution to reduce aliasing in an undersampled image sequence, in: M.M. Blouke, G.M. Williams, N. Sampat and T. Yeh (eds.), Sensors and Camera Systems for Scientific, Industrial, and Digital Photography Applications (Proceedings Electronic Imaging 2000, San Jose, California, January 24–25), Proceedings SPIE 3965, pp. 214–222, 2000. DOI PDF BibTeX

1999

• C.L. Luengo Hendriks and L.J. van Vliet, Resolution enhancement of a sequence of undersampled shifted images, in: M. Boasson, J.A. Kaandorp, J.F.M. Tonino and M.G. Vosselman (eds.), Proceedings 5th Annual Conference of the Advanced School for Computing and Imaging (Heijen, The Netherlands, June 15–17), pp. 95–102, ASCI, Delft, 1999. PDF BibTeX
• L.J. van Vliet and C.L. Luengo Hendriks, Improving spatial resolution in exchange of temporal resolution in aliased image sequences, in: B.K. Ersboll and P. Johansen (eds.), Proceedings 11th Scandinavian Conference on Image Analysis (Kangerlussuaq, Greenland, June 7–11), pp. 493–499, Pattern Recognition Society of Denmark, Lyngby, Denmark, 1999. PDF BibTeX

Technical Reports, Monographs & Edited Volumes

2014

• C.L. Luengo Hendriks (ed.), Special issue: Advances in Mathematical Morphology, Pattern Recognition Letters 47:1–182, Elsevier, 2014. ScienceDirect

2013

• C.L. Luengo Hendriks, Pre-study on automatically determining road condition with a camera, Technical Report 35 (Blue series), Centre for Image Analysis, Uppsala, Sweden, 2013. PDF
• C.L. Luengo Hendriks, G. Borgefors and R. Strand (eds.), Mathematical Morphology and Its Applications to Signal and Image Processing (Proceedings of the 11th International Symposium on Mathematical Morphology, Uppsala, Sweden, May 27–29), LNCS 7883, Springer, 2013. DOI

2010

• C.L. Luengo Hendriks and M. Gavrilovic (eds.), Proceedings SSBA 2010, Symposium on Image Analysis (Uppsala, Sweden, March 11–12), Centre for Image Analysis, 2010.

2004

• M. van Ginkel, C.L. Luengo Hendriks and L.J. van Vliet, A short introduction to the Radon and Hough transforms and how they relate to each other, Technical Report QI-2004-01, Quantitative Imaging Group, Delft University of Technology, Delft, The Netherlands, 2004. PDF BibTeX

2003

• C.L. Luengo Hendriks, Structure characterization using mathematical morphology, Ph.D. Thesis, Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 2003. PDF (11Mb) BibTeX more info
• C.L. Luengo Hendriks, M. van Ginkel and L.J. van Vliet, Underestimation of the radius in the Radon transform for circles and spheres, Technical Report PH-2003-02, Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 2003. PDF BibTeX

2001

• C.L. Luengo Hendriks, D. Rowlands and S. Singleton, 3D structure quantification of tea leaf and ice cream by image analysis and x-ray micro-computed tomography, Technical Report, Unilever Research Colworth, Bedford, United Kingdom, 2001.

2000

• C.L. Luengo Hendriks, G.M.P. van Kempen, L.J. van Vliet, S. Singleton and J.C.G Blonk, The use of morphological sieves to differentiate microstructures of food products, Technical Report, Unilever Research Vlaardingen, Vlaardingen, The Netherlands, 2000.

1998

• C.L. Luengo Hendriks, L.J. van Vliet and K. Schutte, Improved resolution in infrared imaging using randomly shifted images, Technical Report FEL-98-S315, TNO-FEL, Rijswijk, The Netherlands, 1998.
• C.L. Luengo Hendriks, Improved resolution in infrared imaging using randomly shifted images, M.Sc. Thesis, Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 1998. PDF BibTeX more info

Conference Abstracts

2013

• M.N. Boone, E.L.G. Wernersson, M. Dierick, C.L. Luengo Hendriks and L. Van Hoorebeke, Qualitative comparison of several phase correction algorithms in single-image in-line X-ray phase contrast tomography, 1st International Conference on Tomography of Materials and Structures, Ghent, Belgium, July 1–5, 2013.
• M.N. Boone, E.L.G. Wernersson, M. Dierick, L. Brabant, E. Pauwels, C.L. Luengo Hendriks and L. Van Hoorebeke, Comparison of several phase retrieval and phase correction methods for single-image in-line X-ray phase contrast tomography, International Symposium on Biomedical Imaging: From Nano to Macro, San Francisco, California, April 7–11, 2013. (Poster presentation)

2009

• B.S. Tanem, Y. Li, P.E. Vullum, E.K. Gamstedt and C.L. Luengo Hendriks, Elastic properties of microfibrillated cellulose and its nanocomposites; Advanced electron microscopy combined with micromechanical modelling, NANOMAT conference, Lillehammer, Norway, June 16–17, 2009. (Oral presentation)
• S.V.E. Keränen, A.H. DePace, C.L. Luengo Hendriks, C.C. Fowlkes, P. Arbelaez, B. Ommer, T. Brox, C. Henriquez, Z. Wunderlich, K. Eckenrode, B. Fisher, A. Hammonds, S.E. Celniker, J. Malik, D.W. Knowles, M.B. Eisen, M.D. Biggin, Computational analysis of quantitative changes in gene expression and embryo morphology between species, 74th Symposium: Evolution – The Molecular Landscape, Cold Spring Harbor, New York, May 27–June 1, 2009. (Poster presentation)
• W. Fisher, R. Weiszmann, A. Hammonds, S. MacArthur, X. Li, A.H. DePace, S.V.E. Keränen, C. Henriquez, C.L. Luengo Hendriks, C.C. Fowlkes, D.W. Knowles, J. Malik, B. Berman, M.B Eisen, M.D. Biggin, S. Celniker, Identification of cis-regulatory elements using computational and experimental approaches, 50th Annual Drosophila Research Conference, Chicago, Illinois, March 4–8, 2009. (Poster presentation)
• A.H. DePace, C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, C. Henriquez, L. Simirenko, K. Eckenrode, M. Meyer, D.W. Knowles, M.D. Biggin, J. Malik, M.B. Eisen, Comparison of gene expression at cellular resolution in Drosophila reveals distinct transcriptional niches between species, 50th Annual Drosophila Research Conference, Chicago, Illinois, March 4–8, 2009. (Oral presentation)

2008

• C.L. Luengo Hendriks, S.V.E. Keränen, P. Arbelaez, G.H. Weber, C.C. Fowlkes, C.N. Henriquez, D.W. Kaszuba, B. Hamann, J. Malik, M.D. Biggin and D.W. Knowles, A morphology and gene expression atlas of Drosophila embryogenesis, 49th Annual Drosophila Research Conference, San Diego, California, April 2–6, 2008. Text (Oral presentation)
• M.B. Eisen, C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, C.N. Henriquez, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, J. Malik, D.W. Knowles, M.D. Biggin, A.H. DePace, A cellular resolution atlas of gene expression in Drosophila pseudoobscura reveals interspecies variation in embryonic patterning, 49th Annual Drosophila Research Conference, San Diego, California, April 2–6, 2008. Text (Poster presentation)
• S.V.E. Keränen, B.D. Pfeiffer, B. Fisher, A. Hammonds, C.L. Luengo Hendriks, C.C. Fowlkes, C.N. Henriquez, D.W. Knowles, J. Malik, M.B. Eisen, M.D. Biggin and S. Celniker, Quantitative 3D analysis of expression patterns driven by cis-regulatory modules, 49th Annual Drosophila Research Conference, San Diego, California, April 2–6, 2008. Text (Poster presentation)
• C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, B. Hamann, M.B. Eisen, J. Malik, M.D. Biggin and D.W. Knowles, Berkeley Drosophila Transcription Network Project: Morphology and gene expression atlas, Workshop on Bio-Image Informatics: Biological Imaging, Computer Vision and Data Mining, Santa Barbara, California, January 17–18, 2008. PDF (Oral presentation)

2007

• D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, B. Hamann, M.B. Eisen, J. Malik and M.D. Biggin, Berkeley Drosophila Transcription Network Project: Morphology and gene expression atlas, Genome Informatics, Cold Spring Harbor, New York, November 1–5, 2007. (Oral presentation)
• D. Sudar, C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Imaging and visualization for 3-D gene expression analyses in Drosophila embryos, Microscopy and Microanalysis 2007, Fort Lauderdale, Florida, August 5–9, 2007. (Poster presentation)
• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, A.H. DePace, C. Henriquez, D.W. Kaszuba, B. Hamann, M.B. Eisen, J. Malik, D. Sudar, M.D. Biggin and D.W. Knowles, Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution, 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21–25, 2007. (Oral presentation, Highlights Track)
• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, 15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21–25, 2007. (Poster presentation)
• C.L. Luengo Hendriks, C.C. Fowlkes, S.V.E. Keränen, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, 48th Annual Drosophila Research Conference, Philadelphia, Pennsylvania, March 7–11, 2007. Text (Poster presentation)
• A.H. DePace, S. MacArthur, D. Pollard, V. Iyer, S.V.E. Keränen, C. Henriquez, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, J. Malik, D.W. Knowles, M.D. Biggin and M.B. Eisen, 3-Dimensional quantitative analysis of gene expression in multiple Drosophila species, 48th Annual Drosophila Research Conference, Philadelphia, Pennsylvania, March 7–11, 2007. Text (Poster presentation)
• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, L. Simirenko, G.H. Weber, O. Rübel, M.-Y. Huang, A.H. DePace, C. Henriquez, X.-Y. Li, H.C. Chu, D.W. Kaszuba, A. Beaton, S. Celniker, B. Hamann, M.B. Eisen, J. Malik, D.W. Knowles and M.D. Biggin, Virtual embryos as tools for 3D gene expression analyses, Computational Cell Biology, Cold Spring Harbor, New York, March 6–9, 2007. (Poster presentation)

2006

• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, A.H. DePace, C.N. Henriquez, H. Peng, D. Sudar, B. Hamann, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms, Integrating Evolution, Development and Genomics, Berkeley, California, May 31–June 2, 2006. (Poster presentation)
• C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, M.-Y. Huang, O. Rübel, B. Hamann, D. Sudar, J. Malik, M.D. Biggin and D.W. Knowles, Quantitative live imaging describes morphogenetic nuclear movements in early Drosophila embryo, ISAC XXIII International Congress, Québec City, Canada, May 20–24, 2006. Text (Oral presentation)
• A.H. DePace, S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, B. Hamann, J. Malik, D.W. Knowles, M.D. Biggin and M.B. Eisen, Building a 3-dimensional atlas of gene expression in multiple Drosophila species, The Biology of Genomes, Cold Spring Harbor, New York, May 10–14, 2006. (Oral presentation)
• C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, H. Peng, A.H. DePace, L. Simirenko, B. Hamann, D. Sudar, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, Quantitative live imaging describes morphogenetic nuclear movements prior to gastrulation, 47th Annual Drosophila Research Conference, Houston, Texas, March 29–April 2, 2006. Text (Poster presentation, presented orally at the Live Cell Imaging workshop)
• D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, H. Peng, A.H. DePace, L. Simirenko, B. Hamann, D. Sudar, J. Malik, M.B. Eisen and M.D. Biggin, Berkeley Drosophila Transcription Network Project: 3D blastoderm gene expression atlas, 47th Annual Drosophila Research Conference, Houston, Texas, March 29–April 2, 2006. Text (Oral presentation)
• C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, A.H. DePace, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, B. Hamann, M.B. Eisen, D. Sudar, D.W. Knowles, M.D. Biggin and J. Malik, Complex interactions between d/v and a/p patterning systems before gastrulation revealed by a 3-D atlas of gene expression patterns, 47th Annual Drosophila Research Conference, Houston, Texas, March 29–April 2, 2006. Text (Oral presentation)
• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, D. Sudar, B. Hamann, J. Malik, M.B. Eisen, M.D. Biggin and D.W. Knowles, A morphogenetic framework for analyzing gene expression in Drosophila melanogaster blastoderms, 47th Annual Drosophila Research Conference, Houston, Texas, March 29–April 2, 2006. Text (Poster presentation)
• S.V.E. Keränen, C.L. Luengo Hendriks, C.C. Fowlkes, G.H. Weber, O. Rübel, M.-Y. Huang, L. Simirenko, A.H. DePace, H. Peng, M.B. Eisen, B. Hamann, J. Malik, D.W. Knowles, D. Sudar and M.D. Biggin, Spatio-temporal expression analysis at cellular resolution in the Drosophila embryo reveals new dynamics of morphology and gene expression, Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor, New York, March 23–26, 2006. Text (Oral presentation)

2005

• D.W. Knowles, C.L. Luengo Hendriks, S.V.E. Keränen, C.C. Fowlkes, G.H. Weber, O. Rübel, H. Peng, A.H. DePace, B. Hamann, D. Sudar, M.B. Eisen, M.D. Biggin and J. Malik, Berkeley Drosophila Transcription Network Project: 3D blastoderm gene expression atlas, Genome Informatics, Cold Spring Harbor, New York, October 28–November 1, 2005. (Oral presentation)
• C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, D. Sudar and J. Malik, Registering Drosophila embryos at cellular resolution to build a quantitative 3D map of gene expression patterns and morphology, CSB 2005 Workshop on BioImage Data Minning and Informatics, Palo Alto, California, August 2005. (Oral presentation)
• C.L. Luengo Hendriks, D.W. Knowles, S.V.E. Keränen, G.H. Weber, M.D. Biggin and D. Sudar, Automated delineation of cells and nuclei and quantification of gene expression in 3D images of whole Drosophila blastoderm embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30–April 3, 2005. Text (Poster presentation)
• C.C. Fowlkes, C.L. Luengo Hendriks, S.V.E. Keränen, M.D. Biggin, D.W. Knowles, D. Sudar and J. Malik, Building composite maps of gene expression patterns: registering morphology and gene expression between 3D representations of Drosophila embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30–April 3, 2005. Text (Poster presentation)
• G.H. Weber, C.L. Luengo Hendriks, S.V.E. Keränen, S.E. Dillard and B. Hamann, Visualization tools for three-dimensional gene expression data in Drosophila, 46th Annual Drosophila Research Conference, San Diego, California, March 30–April 3, 2005. Text (Poster presentation)
• S.V.E. Keränen, C.L. Luengo Hendriks, D. Sudar, M.D. Biggin and D.W. Knowles, Counting gene expressing nuclei in whole Drosophila blastoderm embryos, 46th Annual Drosophila Research Conference, San Diego, California, March 30–April 3, 2005. Text (Poster presentation)

Course Literature & Software Manuals

• C.L. Luengo Hendriks, L.J. van Vliet, B. Rieger, M. van Ginkel and R. Ligteringen, DIPimage user manual, Quantitative Imaging Group, Delft University of Technology, Delft, The Netherlands, 1999–2014. PDF
• G.M.P. van Kempen, M. van Ginkel, C.L. Luengo Hendriks and L.J. van Vliet, DIPlib programmers's guide, Quantitative Imaging Group, Delft University of Technology, Delft, The Netherlands, 1995–2014. PDF
• G.M.P. van Kempen, M. van Ginkel, C.L. Luengo Hendriks, B. Rieger and L.J. van Vliet, DIPlib function reference, Quantitative Imaging Group, Delft University of Technology, Delft, The Netherlands, 1995–2014. PDF
• C.L. Luengo Hendriks, L.J. van Vliet and M. van der Glas, Image analysis (course material for tn3531-p), Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 2002. PDF
• C.L. Luengo Hendriks, MEX-file programming for image processing using DIPimage, Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 2000. PDF
• C.L. Luengo Hendriks and L.J. van Vliet, HRPIC: Superresolution toolbox for MATLAB 5, Pattern Recognition Group, Delft University of Technology, Delft, The Netherlands, 1999.

© 2001-2018 Cris Luengo
Last modified January 4, 2018.