Non-refereed conferences and workshops

Authors affiliated with CBA are in bold.

1. Case Specific Finite Element Analysis of the Strains Experienced by Osteocytes
   Authors: Peter Varga(1), Alexandra Pacureanu (2), Max Langer(3), Bernhard Hesse (1), Francoise Peyrin (3), Kay Raum (1)
   (1) Julius Wolff Institute & Berlin-Brandenburg School for Regenerative Therapies, Charité, Berlin, Germany
   (2) SciLifeLab, UU
   (3) European Synchrotron Radiation Facility, Creatis, Université de Lyon, France
   In Proceedings: International Conference on Computational Bioengineering, Leuven, Belgium
   Comment: Abstract review

2. The 3D Orientation of Mineralized Collagen Fibrils in Human Lamellar Bone and Its Mechanical Consequences
   Authors: Peter Varga (1), Alexandra Pacureanu (2), Max Langer (3), Heikki Suhonen (3), Bernhard Hesse (1), Quentin Grimal (4), Peter Cloetens, Kay Raum, Francoise Peyrin
   (1) Julius Wolff Institute & Berlin-Brandenburg School for Regenerative Therapies, Charité, Berlin, Germany
   (2) SciLifeLab, UU
   (3) European Synchrotron Radiation Facility, Creatis, Université de Lyon, France
   (4) LIP, Université Pierre et Marie Curie, Paris, France
   In Proceedings: 19th Congress of the European Society of Biomechanics, Patras, Greece
   Comment: Abstract review

3. Interactive Visual Simulation for Photovoltaic Design and Planning in the Built Environment
   Authors: David Lingfors, Joakim Widén, Stefan Seipel
   In Proceedings: 28th European Photovoltaic Solar Energy Conference, Paris, France

4. Movement on Uneven Surfaces Displays Characteristic Features of Hop Diffusion
   Authors: Ingela Parmryd (1), Jeremy Adler (2), Ida-Maria Sintorn, Robin Strand
   (1) Department of Medical Cell Biology, UU
   (2) Cancer and Vascular Biology, UU
   In Proceedings: 57th Biophysical Society Annual Meeting, Philadelphia,USA, Biophysical Journal, volume 104, number 2, page 524A
   Comment: Abstract review

5. Viewing and Analyzing Slide Scanner Data Using CellProfiler (Work in Progress)
   Authors: Petter Ranefall (1), Alexandra Pacureanu (1), Carolin Wählby (1,2)
   (1) Science for Life Laboratory, SciLifeLab, UU
   (2) Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA, USA
   In Proceedings: European BioImage Analysis Symposium 2013, Barcelona, Spain, page 58

6. Towards Automated Virus Detection and Identification Using TEM
   Author: Ida-Maria Sintorn (1), Gustaf Kylberg, Rickard Nordström (1), Lars Haag (1), Eva Coufalova (2), Michal Drsticka (2)
   (1) Vironova AB, Stockholm, Sweden
   (2) Delong Instruments, Brno, Czech Republic
   In Proceedings: Microscopy Conference 2013, Regensburg, Germany, Part II, pages 397-398

7. Factors Influencing High Quality Low Voltage TEM Imaging of Biological Routinely Stained Specimen
   Authors: Ida-Maria Sintorn (1), Rickard Nordström (1), Lars Haag (1), Eva Coufalova (2), Michal Drsticka (2)
   (1) Vironova AB, Stockholm, Sweden
   (2) Delong Instruments, Brno, Czech Republic
   In Proceedings: Microscopy Conference 2013, Regensburg, Germany, part I, pages 321-322

8. Large-Scale Analysis of Live Cells
   Authors: Sajith Kecheril Sadanandan (1), Carolina Wählby (1)
   (1) Science for Life Laboratory, SciLifeLab, UU
   In Proceedings: poster at eSSENCE Academy Workshop 2013, Lund

9. Debris Removal in Pap-Smear Images
   Authors: Patrik Malm , Byju N. Balakrishnan (1), Vilayil K. Sujathan (2), Rajesh Kumar (1), Ewert Bengtsson
   (1) Centre for Development of Advanced Computing, Thiruvananthapuram, India
   (2) Regional Cancer Centre, Thiruvananthapuram, India
   In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

10. Creating Templates for Finding Proteins in MET Volume Images
    Authors:  Lennart Svensson, Ida-Maria Sintorn
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

11. Chromatin Pattern Analysis of Cell Nuclei for Improved Cervical Cancer Screening
    Authors:  Ramin Moshavegh (1,2), Babak Ehteshami Bejnordi (1,2), K. Sujathan (3), Patrik Malm, Ewert Bengtsson, Andrew Mehnert (1,2)
    (1) Department of Signals and Systems, Chalmers University of Technology, Göteborg
    (2) MedTech West, Sahlgrenska University Hospital, Göteborg
    (3) Department of Pathology, Regional Cancer Centre (RCC), Thiruvananthapuram, India
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

12. Image-based Screening of Zebrafish
    Authors: Omer Ishaq (1), Alexandra Pacureanu (1), Carolina Wählby (1)
    (1)Science for Life Laboratory, SciLifeLab, UU
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

13. Worms and Digital Image Processing in the Search for Novel Drugs
    Authors: Carolina Wählby (1), Lee Kamentsky (1), Zihan H. Liu (1), Tammy Riklin-Raviv (2), Annie L. Conery (3), Eyleen J. O'Rourke (3), Katherine L. Sokolnicki (1), Orane Visvikis (4), Vebjorn Ljosa (1), Javier E. Irazoqui (4), Polina Golland (2), Gary Ruvkun (3), Frederick M. Ausubel (3), and Anne E. Carpenter (1)
    (1) Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA
    (2) Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA
    (3) Dept. of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA
    (4) Developmental Immunology Program, Dept. of Pediatrics, Mass. General Hospital, Boston, MA
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

14. Identifying All Individuals in a Honeybee Hive - Progress Towards Mapping All Social Interactions
    Authors: Cris L. Luengo Hendriks, Zi Quan Yu, Antoine Lecocq (1,2), Teatske Bakker (1), Barbara Locke (1), Olle Terenius (1)
    (1) Department of Ecology, SLU, Uppsala
    (2) Currently at: Department of Agriculture & Ecology, University of Copenhagen
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

15. Towards Faster Fuzzy Connectedness
    Authors: Filip Malmberg, Robin Strand
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)

16. Priors for X-Ray in-Line Phase Tomography of Heterogeneous Objects
    Authors: Max Langer (1,2), Bernhard Hesse (1,2,3), Alexandra Pacureanu (4), Heikki Suhonen (1), Peter Cloetens (1), Kay Raum (2), Francoise Peyrin (1,2)
    (1) European Synchrotron Radiation Facility, Grenoble, France
    (2) Creatis, Université de Lyon, Lyon, France
    (3) Julius Wolff Institute & Berlin-Brandenburg School for Regenerative Therapies, Charité, Berlin, Germany
    (4) SciLifeLab, Uppsala University
    In Proceedings: Swedish Symposium on Image Analysis (SSBA), Göteborg (electronic publication)